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Resume / CV

Ziynet Nesibe Kesimoglu – Research Assistant and PhD student at Department of Computer Science and Engineering at University of North Texas. Interested in computational biology, data science, machine learning/deep learning. Skilled in programming especially in R, python, Java and C. Passionate about research with strong combination of programming skills, statistics, and mathematics. Now, improving computational tools integrating high-throughput biological datasets, inferring gene regulatory networks, and mainly leveraging graph representation learning, machine learning/deep learning, mathematics, and statistics to solve open problems and to decipher underlying biological mechanisms in complex diseases, especially in cancer.

Linkedin: https://www.linkedin.com/in/ziynetnesibe

Orcid: https://orcid.org/0000-0001-8592-4365

Twitter: https://twitter.com/ziynet_

Education

  • PhD in Computer Science: 2020-Present University of North Texas
  • PhD in Computer Science: 2017-2020 Marquette University (transferred to UNT)
  • PhD in Computer Science and Engineering (Not completed): 2014–2017 Sabanci University
  • MS in Computer Engineering: 2012-2014 Fatih University Computer Engineering

Thesis title: “Securing Paper Based Exam Evaluation on the Cloud”

  • BS in Math (Double Major): 2010-2013 Fatih University Mathematics
  • BS in Computer Engineering: 2008-2012 Fatih University Computer Engineering
  • High School: 2004-2008 60th Year High School

Research Interests

  • Bioinformatics
  • Machine Learning/Deep Learning
  • Natural Language Processing
  • Pattern Recognition
  • Digital Image Processing
  • Cryptology

Articles

  • Kesimoglu, Ziynet Nesibe, and Serdar Bozdag. “Crinet: A computational tool to infer genome-wide competing endogenous RNA (ceRNA) interactions.” Plos one 16.5 (2021): e0251399.
  • Z.N. Dayioglu, M.S. Kiraz, F. Birinci, I.H. Akin. “Secure Database in Cloud Computing – CryptDB revisited.” International Journal of Information Security Science 3.1 (2014): 129-147.
  • Z.N. Dayioglu, M.S. Kiraz, F. Birinci, I.H. Akin. ”Secure Database in Cloud Computing: CryptDB Revisited”, In Proceedings of the 6th International Conference on Information Security and Cryptology, ISCTurkey 2013, Ankara, Turkey, pp. 94-104, 20-21 September 2013. ISBN:978-605-86904-1-7.

Honors & Awards

  • 2020 CSSRFP (Computational Sciences Summer Research Fellows Program) Summer Research Funding
  • 2019 CSSRFP (Computational Sciences Summer Research Fellows Program) Summer Research Funding
  • NMDSI (Northwestern Mutual Data Science Institute) Summer Research Award 2019
  • Best Poster Award at 2018 Forward Thinking Poster Session/Colloquy
  • 2018 CSSRFP (Computational Sciences Summer Research Fellows Program) Summer Research Funding
  • TUBITAK Scholarship for Undergraduate Students to Support Graduate Education (2013)
  • OSYM High Performance Scholarship (due to the rank at the national university entrance exam of Turkey – 270th in quantitative section) (2008)

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